Let W be a string of length n over an alphabet Σ, k be a positive integer, and be a set of length-k substrings of W. The ETFS problem (Edit distance, Total order, Frequency, Sanitization) asks us to construct a string X_ED such that: (i) no string of occurs in X_ED; (ii) the order of all other length-k substrings over Σ (and thus the frequency) is the same in W and in X_ED; and (iii) X_ED has minimal edit distance to W. When W represents an individual’s data and represents a set of confidential patterns, the ETFS problem asks for transforming W to preserve its privacy and its utility [Bernardini et al., ECML PKDD 2019]. ETFS can be solved in (n²k) time [Bernardini et al., CPM 2020]. The same paper shows that ETFS cannot be solved in (n^{2-δ}) time, for any δ > 0, unless the Strong Exponential Time Hypothesis (SETH) is false. Our main results can be summarized as follows:

- An (n²log²k)-time algorithm to solve ETFS.

- An (n²log²n)-time algorithm to solve AETFS (Arbitrary lengths, Edit distance, Total order, Frequency, Sanitization), a generalization of ETFS in which the elements of can have arbitrary lengths. Our algorithms are thus optimal up to subpolynomial factors, unless SETH fails.

In order to arrive at these results, we develop new techniques for computing a variant of the standard dynamic programming (DP) table for edit distance. In particular, we simulate the DP table computation using a directed acyclic graph in which every node is assigned to a smaller DP table. We then focus on redundancy in these DP tables and exploit a tabulation technique according to dyadic intervals to obtain an optimal alignment in ̃(n²) total time. Beyond string sanitization, our techniques may inspire solutions to other problems related to regular expressions or context-free grammars.

Leibniz International Proceedings in Informatics
CPM 2021 - 32nd Annual Symposium on Combinatorial Pattern Matching
Life Sciences and Health

Mieno, T, Pissis, S, Stougie, L, & Sweering, M.J.M. (2021). String Sanitization Under Edit Distance: Improved and Generalized. In Proceedings of the 32nd Annual Symposium on Combinatorial Pattern Matching CPM 2021 (pp. 19:1–19:18).