Strain-aware assembly of genomes from mixed samples using flow variation graphs
Presented at the International Conference on Research in Computational Molecular Biology (May 2020), Padua, Italy
The goal of strain-aware genome assembly is to reconstruct all individual haplotypes from a mixed sample at the strain level and to provide abundance estimates for the strains.
|Lecture Notes in Computer Science/Lecture Notes in Artificial Intelligence|
|International Conference on Research in Computational Molecular Biology|
|Organisation||Centrum Wiskunde & Informatica, Amsterdam (CWI), The Netherlands|
Baaijens, J.A, Stougie, L, & Schönhuth, A. (2020). Strain-aware assembly of genomes from mixed samples using flow variation graphs. In Lecture Notes in Computer Science/Lecture Notes in Artificial Intelligence. doi:10.1007/978-3-030-45257-5_14