WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

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Note Parts of WhatsHap have been described in different articles. Please choose an appropriate citation depending on your use case: https://whatshap.readthedocs.io/en/latest/howtocite.html#howtocite
Rights Open Source (MIT License)
Schönhuth, A, Patterson, M.D, Marschall, T, & Martin, M. (2016). WhatsHap.