WhatsHap

Schönhuth, Alexander; Patterson, Murray; Marschall, Tobias; Martin, Marcel

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

Additional Metadata
Note	Parts of WhatsHap have been described in different articles. Please choose an appropriate citation depending on your use case: https://whatshap.readthedocs.io/en/latest/howtocite.html#howtocite
Rights	Open Source (MIT License)
Organisation	Evolutionary Intelligence
Citation APA Style AAA Style APA Style Cell Style Chicago Style Harvard Style IEEE Style MLA Style Nature Style Vancouver Style American-Institute-of-Physics Style Council-of-Science-Editors Style BibTex Format Endnote Format RIS Format CSL Format DOIs only Format	Schönhuth, A., Patterson, M., Marschall, T., & Martin, M. (2016). WhatsHap.

Additional Files
view at homepage

See Also
techReport WhatsHap: fast and accurate read-based phasing M. Martin (Marcel), M.D. Patterson (Murray), S. Garg (Shilpa), Fischer, S. (Sarah), N. Pisanti (Nadia), G.W. Klau (Gunnar), A. Schönhuth (Alexander) and T. Marschall (Tobias)
inProceedings WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads M.D. Patterson (Murray), T. Marschall (Tobias), N. Pisanti (Nadia), L.J.J. van Iersel (Leo), L. Stougie (Leen), G.W. Klau (Gunnar) and A. Schönhuth (Alexander)
article WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M.D. Patterson (Murray), T. Marschall (Tobias), N. Pisanti (Nadia), L.J.J. van Iersel (Leo), L. Stougie (Leen), G.W. Klau (Gunnar) and A. Schönhuth (Alexander)

WhatsHap

Publication

Publication

techReport
WhatsHap: fast and accurate read-based phasing

inProceedings
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads

article
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

Address

Publishing at CWI

Questions or comments?

WhatsHap

Publication

Publication

techReport WhatsHap: fast and accurate read-based phasing

inProceedings WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads

article WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

Workflow

Workflow

Add Content

techReport
WhatsHap: fast and accurate read-based phasing

inProceedings
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads

article
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads