Snakemake-a scalable bioinformatics workflow engine

Köster, Johannes; Rahmann, Sven

doi:10.1093/bioinformatics/bts480

J. Köster (Johannes) and S. Rahmann (Sven)

2012-10-01

Snakemake-a scalable bioinformatics workflow engine

Bioinformatics , Volume 28 - Issue 19 p. 2520- 2522

Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.

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Persistent URL	doi.org/10.1093/bioinformatics/bts480
Journal	Bioinformatics
Citation APA Style AAA Style APA Style Cell Style Chicago Style Harvard Style IEEE Style MLA Style Nature Style Vancouver Style American-Institute-of-Physics Style Council-of-Science-Editors Style BibTex Format Endnote Format RIS Format CSL Format DOIs only Format	Köster, J., & Rahmann, S. (2012). Snakemake-a scalable bioinformatics workflow engine. Bioinformatics, 28(19), 2520–2522. doi:10.1093/bioinformatics/bts480

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