2008

# Constructing the Simplest Possible Phylogenetic Network from Triplets,

## Publication

### Publication

*Presented at the International Symposium on Algorithms and Computation, Gold Coast, Australia*

A phylogenetic network is a directed acyclic graph that visualises
an evolutionary history containing so-called reticulations such
as recombinations, hybridisations or lateral gene transfers. Here we consider
the construction of a simplest possible phylogenetic network consistent
with an input set T, where T contains at least one phylogenetic
tree on three leaves (a triplet) for each combination of three taxa. To
quantify the complexity of a network we consider both the total number
of reticulations and the number of reticulations per biconnected component,
called the level of the network. We give polynomial-time algorithms
for constructing a level-1 respectively a level-2 network that contains a
minimum number of reticulations and is consistent with T (if such a
network exists). In addition, we show that if T is precisely equal to the
set of triplets consistent with some network, then we can construct such
a network, which minimises both the level and the total number of reticulations,
in time O(|T|^{k+1}), if k is a fixed upper bound on the level.

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Springer | |

Lecture Notes in Computational Science and Engineering | |

International Symposium on Algorithms and Computation | |

Organisation | Multiscale Dynamics |

van Iersel, L., & Kelk, S. (2008). Constructing the Simplest Possible Phylogenetic Network from Triplets,. In Lecture Notes in Computational Science and Engineering. Springer. |

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