Pan-genome Graph Algorithms and Data Integration January 2020 - December 2023
Collection
Collection
PANGAIA
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Triplet-based similarity score for fully multilabeled trees with poly-occurring labels Article
Bioinformatics, 37(2), 178-184.S. Ciccolella (Simone), G. Bernardini (Giulia), L. Denti (Luca), P. Bonizzoni (Paola), M. Previtali (Marco) and G. Della Vedova (Gianluca)
January 2021
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IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences Article
BMC BioinformaticsH. Alamro (Hayam), M. Alzamel (Mai), C.S. Iliopoulos (Costas), S. Pissis (Solon) and S. Watts (Steven)
February 2021
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Incomplete Directed Perfect Phylogeny in linear time In Proceedings
G. Bernardini (Giulia), P. Bonizzoni (Paola) and P. Gawrychowski (Paweł)
July 2021 -
August 2021
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Beyond the BEST Theorem: Fast assessment of Eulerian Trails In Proceedings
A. Conte (Alessio), R. Grossi (Roberto), G. Loukides (Grigorios), N. Pisanti (Nadia), S. Pissis (Solon) and G. Punzi (Giulia)
September 2021 -
phasebook: haplotype-aware de novo assembly of diploid genomes from long reads Article
Genome Biology, 22(1)X. Luo (Vincent), X. Kang (Xiongbin) and A. Schönhuth (Alexander)
December 2021
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Strainline: Full-length de novo viral haplotype reconstruction from noisy long reads Article
Genome Biology, 23(1), 29:1-29:27.X. Luo (Vincent), X. Kang (Xiongbin) and A. Schönhuth (Alexander)
January 2022
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Efficient computation of sequence mappability Article
Algorithmica, 1418-1440.P. Charalampopoulos (Panagiotis), C.S. Iliopoulos (Costas), T. Kociumaka (Tomasz), S. Pissis (Solon), J. Radoszewski (Jakub) and J. Straszyński (Juliusz)
February 2022