The class Experiments holds the data for a CC3D experiment as an xml object. This objects is created from a template xml file. Elements that are already present in the template can be changed or removed and new elements can be added. When the xml is written to file all unchanged content of the template, including commented xml, is written to the new file.
Edit statistics save options
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Remove element from the Potts element
Parameters: | tagname – name of element |
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Set chemotaxis for cell type
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Edit contact energy
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Set generic plugin. If the plugin is already in the template, it is updated. If not, the plugin is added to the model. This function does not support multi-level xml elements.
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Set generic steppable. If the steppable is already in the template, it is updated. If not, the plugin is added to the model. This function does not support multi-level xml elements.
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Set number of Monte Carlo steps
Parameters: | mcs – number of MCS (note that mcs+1 appears in the xml) |
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Edit motility parameters per cell type
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Set number of threads and cores for a simulation
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General function to set a parameter in the Potts element
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Set secretion coefficient for specific cell type
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