Prerequisites

MIMBSimUtils depends on a number of python packages which must be installed.

Numpy

Numpy is a package for numerical computation in python and it provides a very powerful array object. Download numpy and install it according to the instructions. Alternatively, numpy can be installed using pip:

pip install numpy

Scipy

Scipy is a python package of scientific software, which heavily depends on numpy arrays. Download scipy and follow the installation instructions. Alternatively, scipy can be installed using pip:

pip install scipy

Python imaging library

The python imaging library (PIL) is an image processing package for python. Download PIL and install according to the instruction included in the package:

pip install pil

Mahotas and Pymorph

Mahotas and Pymorph are two packages we use for image analysis. These packages can be downloaded from here and here. Alternatively they can be installed using pip:

pip install mahotas
pip install pymorph

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