Index

A | C | D | E | F | G | M | R | S | W

A

addCell() (AnalysisUtils.Cluster method)
addCommandToPBS() (in module CC3DPipeline)
addStatistics() (Experiment.Experiment method)
addTimeStep() (AnalysisUtils.ClusterCellTC method)

C

calcMSDRotForCellTC() (in module AnalysisUtils)
calcMSDTransForCellTC() (in module AnalysisUtils)
Cluster (class in AnalysisUtils)
ClusterCellTC (class in AnalysisUtils)
createPBS() (in module CC3DPipeline)
createPBSScripts() (in module CC3DPipeline)

D

deletePlugin() (Experiment.Experiment method)
deletePottsProperty() (Experiment.Experiment method)
deleteSteppable() (Experiment.Experiment method)
drawRelDirField() (in module ImageUtils)

E

Experiment (class in Experiment)

F

finishPBS() (in module CC3DPipeline)

G

getAngleField() (in module AnalysisUtils)
getCellAngle() (in module AnalysisUtils)
getCellClusters() (in module AnalysisUtils)
getCellInertiaTensor() (in module AnalysisUtils)
getCellOrientation() (in module AnalysisUtils)
getClustersForSim() (in module CC3DPipeline)
getClusterSize() (AnalysisUtils.Cluster method)
getCompactness() (in module AnalysisUtils)
getCompactnessForSim() (in module CC3DPipeline)
getDirector() (in module AnalysisUtils)
getGlobalOrderParameter() (in module AnalysisUtils)
getLCC() (in module AnalysisUtils)
getLocalOrderParameter() (in module AnalysisUtils)
getOrderParameter() (in module AnalysisUtils)
getOrderParameterForSim() (in module CC3DPipeline)
getRelativeDirField() (in module AnalysisUtils)

M

makeImage() (in module ImageUtils)
makeImages() (in module CC3DPipeline)
morphImages() (in module ImageUtils)

R

readChemField() (in module Readers)
readColorMap() (in module Readers)
Readers (module)
readSigma() (in module Readers)
readTau() (in module Readers)
removeCell() (AnalysisUtils.Cluster method)

S

setChemotaxis() (Experiment.Experiment method)
setContact() (Experiment.Experiment method)
setDebugFrequencyInMeta() (Experiment.Experiment method)
setGenericPlugin() (Experiment.Experiment method)
setGenericSteppable() (Experiment.Experiment method)
setMCS() (Experiment.Experiment method)
setMotility() (Experiment.Experiment method)
setMultiCore() (Experiment.Experiment method)
setPottsProperty() (Experiment.Experiment method)
setSecretion() (Experiment.Experiment method)
setSeed() (Experiment.Experiment method)
setTemp() (Experiment.Experiment method)
setVolume() (Experiment.Experiment method)
stackImages() (in module ImageUtils)

W

write() (Experiment.Experiment method)