Quantitative Biology > Quantitative Methods
[Submitted on 25 Jul 2012]
Title:A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees
View PDFAbstract:Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6^r.r!).poly(n)$, where n=|X|. The novelty of this approach is its use of terminals, which are maximal elements of a natural partial order on X, and several insights from the softwired clusters literature. This yields a surprisingly simple and practical bounded-search algorithm and offers an alternative perspective on the underlying combinatorial structure of the hybridization number problem.
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